Hi,
I had the same challenge with two other high speed cameras and solved it via an external trigger.
Both camera where in triggered mode, taking a picture whenever an external trigger is received. I triggered them first with an arbitrary function generator. This worked well - I could trigger the camera "interleaved". When it became too complicated to program the function generator with different frame rates, I used an Arduino setting two pins alternating high and low. This also worked very well.
Meybe external triggering is also an option for you.